For citations, please see my Google Scholar profile. Up to date as of January 7, 2020.

  1. Benjamin D. Lee, Michael A. Timony, and Pablo R. Ruiz. DNAvisualization.org: a serverless web tool for DNA sequence visualization. Nucleic Acids Research, 47(W1):W20–W25, July 2019. doi:10.1093/nar/gkz404. [bibtex] [pdf]
  2. Benjamin D. Lee. Python implementation of codon adaptation index. Journal of Open Source Software, 3(30):905, October 2018. doi:10.21105/joss.00905. [bibtex] [pdf]
  3. Benjamin D. Lee. Squiggle: a user-friendly two-dimensional DNA sequence visualization tool. Bioinformatics, 35(8):1425–1426, September 2018. doi:10.1093/bioinformatics/bty807. [bibtex] [pdf]
  4. Benjamin D. Lee. Ten simple rules for documenting scientific software. PLOS Computational Biology, 14(12):e1006561, December 2018. doi:10.1371/journal.pcbi.1006561. [bibtex] [pdf]